In view of the research of medical quality evaluation in general hospital, current research focuses on the determination of medical quality evaluation index system, and the calculation of weight of hospital or physicians. In ways of extracting index data, it mostly uses semi-automatic entry summary data or existing data in the same system, the extraction results does not meet the three levels of grouping physicians management mode. This paper puts forward automatically extracting dynamic grouping information of clinical physicians, medical quality evaluation index data of each group and clinical physician in each group, using interface integration of webservice+xml, which are based on the ensemble integration platform. Experimental results are automatically extracted the part quality evaluation indexes of each group and clinical physician for a clinical department. The conclusion of this study provides a new team oriented assessment method and quantitative data basis for each clinical department in general hospital.