基于图神经网络的病理全切片图像分类
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国家重点研发计划(2023YFC3402800); 国家自然科学基金(82441029, 62171230, 62101365, 92159301, 62301263, 62301265, 62302228, 82302291, 82302352, 62401272); 江苏省科技厅前沿引领技术基础研究重大项目 (BK2023200)


Pathological Whole Slide Image Classification Based on Graph Neural Network
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    摘要:

    基于全切片图像(whole slide image, WSI)的癌症诊断与分类预测已成为病理学领域的重要研究方向. 然而, WSI图像通常具有极大的尺寸和复杂的结构, 现有方法难以捕捉病理图像中形态各异的图像块之间的复杂联系, 特别是两者之间的空间距离较远时. 为了解决这一问题, 本文提出了一个基于图神经网络的深度学习模型Bi-DDRGNN, 用于实现精确的癌症诊断与亚型分类. Bi-DDRGNN的结构包括有向动态图注意力网络分支DD-GAT和邻域全连接的残差图卷积网络ResGCN. 通过分别从全局视角和邻域视角两个角度构建图结构, Bi-DDRGNN能够有效捕捉图像块之间的长距离依赖关系和局部细节特征, 从而更好地处理WSI中的复杂结构. 具体而言, DD-GAT通过构建有向边和动态调整的注意力机制, 在图像块之间传递信息, 进而捕捉不同区域之间的长程依赖关系; ResGCN模块利用空间邻接关系, 将图像块在局部范围内进行连接, 捕捉WSI的局部特征, 并通过残差连接增强了模型对局部细节的表达能力. 此外, Bi-DDRGNN还通过引入一个特征融合模块GF来有效聚合两分支路径的图特征, 提升最终的分类精度和模型的表达能力. 在3个公开数据集TCGA-NSCLC、TCGA-BRAC、CAMELYON16上进行的广泛实验表明, Bi-DDRGNN的性能优于其他先进算法, 充分证明了模型的有效性.

    Abstract:

    Cancer diagnosis and subtype classification based on whole slide image (WSI) has emerged as a critical research focus in the field of pathology. However, WSIs are characterized by extremely large sizes and complex structures, making it challenging for existing methods to capture the complex relationships among morphologically diverse image patches, particularly when these patches are spatially distant. To address this issue, a deep learning framework based on graph neural network (GNN), termed Bi-DDRGNN, is proposed for accurate cancer diagnosis and subtype classification. The architecture of the proposed Bi-DDRGNN comprises two branches: a directed dynamic graph attention network (DD-GAT) and a neighborhood fully connected residual graph convolutional network (ResGCN). By constructing graph structures from both global and local perspectives, the proposed framework effectively captures long-range dependencies and local fine-grained features among image patches, enabling improved modeling of the complex structures inherent in WSIs. Specifically, the DD-GAT branch builds directed edges and dynamically adjusts attention mechanisms to propagate information across distant regions, facilitating the modeling of long-range dependencies. The ResGCN branch, on the other hand, connects spatially adjacent patches to extract local structural features and enhances the representation of fine details through residual connections. In addition, a graph feature fusion (GF) module is introduced to integrate the features from both branches, thus improving classification performance and the overall representational capability of the model. Extensive experiments on three public datasets—TCGA-NSCLC, TCGA-BRAC, and CAMELYON16—demonstrate that the proposed Bi-DDRGNN outperforms existing state-of-the-art methods, validating the effectiveness of this study.

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仇友辉,蔡程飞,焦一平,李军,孙琦,徐军.基于图神经网络的病理全切片图像分类.计算机系统应用,2025,34(10):162-172

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  • 收稿日期:2025-03-05
  • 最后修改日期:2025-03-31
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  • 在线发布日期: 2025-09-03
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